PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001387.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 769aa    MW: 88553.4 Da    PI: 4.773
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001387.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.95.9e-22162246190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etr gC a++++++ ++++w+v++++leHn
  Itr_sc001387.1_g00002.1 162 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRRGCLAMIRLRLVDSNRWRVDEVKLEHN 242
                              69****************************************98877.....8999****************************** PP

                     FAR1  87 Hela 90 
                              H++ 
  Itr_sc001387.1_g00002.1 243 HPFD 246
                              *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-19162246IPR004330FAR1 DNA binding domain
PfamPF105513.5E-26365458IPR018289MULE transposase domain
PROSITE profilePS5096610.039651687IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-4661685IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-5662689IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MFSAMMADGS SFSPAGDGLS PNHDLEITME EGLENSEQVI GDEISDHEVE SDGVFDIEGN  60
DLENDGDHIL MIDSNDLENT AEQVLEFESS GHDNSEHVLE FGSTDEGHNT NQILEIQSNE  120
PENCTDGDTT IFHDQDGGTS QKKSYLPPVV GMEFESYEDA YNYYNCYAKE LGFAIRVKSS  180
WTKRNSKEKR GAVLCCNCEG FKTMKEASTR RKETRRGCLA MIRLRLVDSN RWRVDEVKLE  240
HNHPFDPERA QNCKSHKKMD SVAKRKLEPA VGVEVRTIKL YRSPTVDTLN YGSSNERDFG  300
NCIDASKCLK VNKGDFQLIC NFFSRMQLTN PNFFYIMDLN DEGNVRNVFW IDSRSRTSYS  360
YFGDVVLVDT TCLSKSYEIP LVVFFGVNHH GEALLLGCGL LVDESFETYI WVLRAWLTCM  420
SGRPPPTIIT DRCKALQNAV SEVFPRAHHC LCLSLVMQSI AETLGELEQP ELFYTVLNRV  480
VYNSLKVDEF EIAWEEMVQH FGISSHEWLQ KLYEDRERWA PVYLKDTFFA GMSVSQPGVS  540
TSHFFEGFVH KETNLKEFFD IYELILQRKH QKEALDDLES KEFNPVLRTR SNYELRLSEM  600
YTKEIFLSFQ VEVELMSTCF SVSQIHTNAP VITYMIKEQD TAGDTRDARN YEVMYDRVGQ  660
DVRCMCSCFN FKGYLCRHAL CVLDHNGVEE IPNQYILSRW RKDFKRLYSP DLGSNNIDIS  720
NPVQWFDHLY RRALQVVEEG MASQDHYMVA WQAFQESLNK VRLVADRHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631083.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X1
RefseqXP_016439117.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
RefseqXP_016439118.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A0V0IST80.0A0A0V0IST8_SOLCH; Uncharacterized protein
STRINGSolyc06g068210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8